CARBP is an online software for the design of DNA CAssettes incorporating sites for RNA-binding proteins (RBPs). It was developed in collaboration with the Orenstein group from Ben Gurion University, and the Yakhini group from IDC Herzeliya.
“Overcoming the design, build, test (DBT) bottleneck for synthesis of nonrepetitive protein-RNA binding cassettes for RNA applications”, Noa Katz, Eitamar Tripto, Naor Granik, Sarah Goldberg, Orna Atar, Zohar Yakhini, Yaron Orenstein, and Roee Amit. Nature Communications 12-1576 (2021).
Available at https://www.nature.com/articles/s41467-021-21578-6
SOLQC is a quality control (QC) tool for synthetic oligo libraries (SOL). It was developed by the Yakhini group, with whom we collaborate on a regular basis.
“SOLQC : Synthetic Oligo Library Quality Control Tool”, Omer Sabary, Yoav Orlev, Roy Shafir, Leon Anavy, Eitan Yaakobi, and Zohar Yakhini. Bioinformatics (2020).