A Looping-Based Model for Quenching Repression
PLOS Computational Biology, (2017)
Yaroslav Pollak, Sarah Goldberg, Roee Amit
Using synthetic bacterial enhancers to reveal a looping-based mechanism for quenching-like repression. Nat. Commun. 7:10407 (2016).
Michal Brunwasser-Meirom, Yaroslav Pollak, Sarah Goldberg, Lior Levy, Orna Atar & Roee Amit
“A protrusion can “eclipse” looping of a long self-avoiding chain” (2016)
Yaroslav Pollak, Sarah Goldberg, Roee Amit
“Self-avoiding wormlike chain model for double-stranded-DNA loop formationb”, Phys. Rev. E 90, 052602 – Published 17 November 2014
Yaroslav Pollak, Sarah Goldberg, and Roee Amit
“Anti-Cooperative and Cooperative protein-protein interactions between TetR isoforms in Synthetic Enhancers”, Journal of Computational Biology, Vol 19 (2012) 115-125
Amit R
“Towards Synthetic Gene Circuits with Enhancers: Biology’s Multi-input Integrators”, Subcellular Biochemistry, Vol 64 (2012) 3-20.
Amit R
“Building Enhancers from the Ground Up: A Synthetic Biology Approach”, Cell, 146 (2011) 1-14.
Amit R, Garcia HG, Phillips R, and Fraser SE
“Single molecule elasticity measurements: a biophysical approach to bacterial nucleoid organization”, Biophys J. 87 (2004) 1392-3.
Amit R, Oppenheim AB, and Stavans J
“Direct observation of RuvAB-catalyzed branch migration of single Holliday junctions”, Proc. Nat. Acad. Sci. USA, 101 (2004) 11605-10.
Amit R, Gileadi O, and Stavans J
“Increase bending rigidity of single DNA molecules by H-NS, a temperature and osmolarity sensor”, Biophys J. 84 (2003) 2467.
Amit R, Oppenheim AB, and Stavans J
“Compaction of single DNA molecules induced by binding of integration host factor (IHF)”, Proc. Nat. Acad. Sci. USA 98 (2001) 10
Ali BMJ, Amit R, Braslavsky I, Oppenheim AB, Gileadi O, and Stavans J
“Objective-type dark-field illumination for scattering from microbeads”, Appl. Opt. 40 (2001) 5650-7.
Braslavsky I, Amit R, Ali BMJ, Gileadi O, Oppenheim AB, and Stavans J